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Revision as of 00:49, 8 December 2014
, 00:49, 8 December 2014→Step 2: pileup --> seq
* These pre-generated pileup files are for the whole genome of all 6 samples
* These pre-generated pileup files are for the whole genome of all 6 samples
python $LASER/LASER-2.01/pileup2seq/pileup2seq.py \
python $LASER/pileup2seq/pileup2seq.py \
-m $HGDP/HGDP_938.site \
-m $HGDP/HGDP_938.site \
-b $BAM/AMD_roi_1-based.bed \
-b $BAM/AMD_roi_1-based.bed \
