Changes

We summarize the input data requirements as following:

We summarize the input data requirements as following:

*  A binary conversion of the genome reference sequence as nucleotides (see [[#Build_Binary_Reference_Genome_and_Word_Index|Build Binary Reference Genome and Word Index]]})  

* A binary conversion of the genome reference sequence as nucleotides (see [[#Build_Binary_Reference_Genome_and_Word_Index|Build Binary Reference Genome and Word Index]]})  

*  A binary conversion of the genome reference sequence as colors plus word indices in color space (see [[#Build_Binary_Reference_Genome_and_Word_Index|Build Binary Reference Genome and Word Index]])  

 

*  Color space reads in color space FASTQ format (see [[#Input_file_requirement|Input file requirement]] for a description)  

* A binary conversion of the genome reference sequence as colors plus word indices in color space (see [[#Build_Binary_Reference_Genome_and_Word_Index|Build Binary Reference Genome and Word Index]])  

*  Color space reads longer than a minimum length requirement. (see [[#Minimum_read_length_requirement|Minimum read length requirement]])  

 

*&nbsp; Specify color space parameter when starting KARMA (see [[#Map_Color_Space_Reads|Map Color Space Reads]])<br>

* Color space reads in color space FASTQ format (see [[#Input_file_requirement|Input file requirement]] for a description)  

 

* Color space reads longer than a minimum length requirement. (see [[#Minimum_read_length_requirement|Minimum read length requirement]])  

 

* Specify color space parameter when starting KARMA (see [[#Map_Color_Space_Reads|Map Color Space Reads]])  

Please note the hardware requirements for KARMA are:

Please note the hardware requirements for KARMA are: