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Revision as of 10:46, 8 December 2014
, 10:46, 8 December 2014→Records
22 36662041 . AATAATT A 756 PASS AC=2;AN=114;AF=0.0175439;GC=55,2,0;GN=57;
22 36662041 . AATAATT A 756 PASS AC=2;AN=114;AF=0.0175439;GC=55,2,0;GN=57;
GF=0.964912,0.0350877,0;NS=57;
HWEAF=0.019571;HWEGF=0.961242,0.038376,0.000383024;
MLEAF=0.0196187;MLEGF=0.960762,0.0392374,2.11537e-15;
HWE_LLR=-0.0222464;HWE_LPVAL=-0.182794;HWE_DF=1;
FIC=-0.00372601;AB=0.384578
GT:PL:DP:AD:GQ 0/0:0,6,145:3:2,0,1:7 0/0:0,12,192:4:4,0,0:12
Here is a description of the record's fields.
Here is a description of the record's fields.
22 : chromosome
22 : chromosome
36662041 : genome position
36662041 : genome position
. : this is the ID field that is left blank.
. : this is the ID field that is left blank.
AATAATT : the reference sequence that is replaced by the alternative sequence below.
AATAATT : the reference sequence that is replaced by the alternative sequence below.
A : so this is basically a deletion of GT
A : so this is basically a deletion of ATAATT.
756 : QUAL field denoting validity of this variant, higher the better.
756 : QUAL field denoting validity of this variant, higher the better.
PASS : a passed variant.
PASS : a passed variant.
AC=2... : fields containing information about the variant.
GT:PL:DP:AD:GQ : format field labels for the genotype columns.
0/0:0,6,145:3:2,0,1:7 : genotype information.
0/0:0,6,145:3:2,0,1:7 : genotype information.
You can obtain the same output by using the following command
You can obtain the same output by using the following command
