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208 bytes added
, 11:22, 8 December 2014
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| HWEGF=0.96,0.04,0.00 : genotype frequency derived from HWEAF | | HWEGF=0.96,0.04,0.00 : genotype frequency derived from HWEAF |
| HWE_LPVAL=-0.18 : log p value of HWE test | | HWE_LPVAL=-0.18 : log p value of HWE test |
− | FIC=-0.003 : genotype likelihood based inbreeding coefficient | + | FIC=-0.003 : genotype likelihood based inbreeding coefficient, ranges -1 to 1. <0 denotes excess of heterozygotes and >0 means excess of homozygotes assuming HWE. |
− | AB=0.38 : genotype likelihood based allele balance | + | AB=0.38 : genotype likelihood based allele balance, ranges 0 to 1 with 0.5 for balance, >0.5 meaning reference bias and <0.5 denoting alternate allele bias. |
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| =====GENOTYPE field===== | | =====GENOTYPE field===== |