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Revision as of 01:29, 9 December 2014
, 01:29, 9 December 2014→Estimate ancestry
This step will take about 5-6 minutes.
This step will take about 5-6 minutes.
$LASER/laser -g $HGDP/HGDP_938.geno -c $HGDP/HGDP_938.RefPC.coord -s $OUT/ancestry/$SAMPLE.laser.seq -K 20 -k 4 -M 0.8 -o $OUT/ancestry/$SAMPLE.laser.2 &
$LASER/laser -g $HGDP/HGDP_938.geno -c $HGDP/HGDP_938.RefPC.coord -s $OUT/ancestry/$SAMPLE.laser.seq -K 20 -k 4 -M 0.8 -o $OUT/ancestry/$SAMPLE.HGDP &
View the results:
View the results:
less -S $OUT/ancestry/${SAMPLE}.laser.2.SeqPC.coord
less -S $OUT/ancestry/${SAMPLE}.HGDP.SeqPC.coord
== Visualizing Ancestry ==
== Visualizing Ancestry ==
