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Revision as of 02:02, 9 December 2014
, 02:02, 9 December 2014→Interested in looking just at European populations?
evince Results_on_HGDP.pdf &
evince Results_on_HGDP.pdf &
==Interested in looking just at European populations?==
==Interested in looking just at European (or East Asian or Central South Asian) populations?==
=== Population information ===
8 European populations in the HGDP dataset, including 156 individuals in total.
17 East Asian populations in the HGDP dataset, including 215 individuals after excluding 4 outliers (defined as more than 5 standard deviations from mean in any of top 10 PCs, 1 removal iteration).
8 Central/South Asian populations in the HGDP dataset, including 195 individuals after excluding 5 outliers (defined as more than 5 standard deviations from mean in any of top 10 PCs, 1 removal iteration). Note that 7 out of these 8 population were collected in Pakistan and 1 was collected in China (Uygur).
=== Step 1: bam --> pileup ===
=== Step 1: bam --> pileup ===
You can skip this, you already did it.
You can skip this, you already did it.
