Changes

SeqShop: Ancestry On Your Own Genome, December 2014 (view source)

79 bytes added , 02:16, 9 December 2014

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Generate the plot:

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Generate the plot for European ancestry:

Rscript plotHGDP.r $HGDP/HGDP.633K.euro.RefPC.coord $OUT/ancestry/${SAMPLE}.HGDP-Euro.SeqPC.coord

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or

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or for East Asian ancestry

Rscript plotHGDP.r $HGDP/HGDP.633K.easia.RefPC.coord $OUT/ancestry/${SAMPLE}.HGDP-EAsia.SeqPC.coord

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or

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or for Central/South Asian ancestry

Rscript plotHGDP.r $HGDP/HGDP.633K.csasia.RefPC.coord $OUT/ancestry/${SAMPLE}.HGDP-CSAsia.SeqPC.coord

Take a look:

evince Results_on_HGDP.pdf &

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