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SeqShop: Analysis of Structural Variation Practical, December 2014 (view source)

Revision as of 16:46, 9 December 2014

196 bytes removed ,  16:46, 9 December 2014
→‎GotCloud Configuration File
Line 188: Line 188:     
Check out the GenomeStrip specific settings at the end of the configuration file
 
Check out the GenomeStrip specific settings at the end of the configuration file
−
  tail -n 8 ${SS}/gotcloud.conf
+
  tail -n 5 ${SS}/gotcloud.conf
    
<ul>
 
<ul>
Line 197: Line 197:  
  ## GenomeSTRIP
 
  ## GenomeSTRIP
 
  #############################
 
  #############################
−
GENOMESTRIP_OUT = $(OUT_DIR)/sv
+
  GENOMESTRIP_MASK_FASTA = $(REF_DIR)/human_g1k_v37.chr22.mask.100.fasta
−
GENOMESTRIP_SVTOOLKIT_DIR = svtoolkit
+
  GENOMESTRIP_PLOIDY_MAP = $(REF_DIR)/humgen_g1k_v37_ploidy.chr22.map
−
  GENOMESTRIP_MASK_FASTA = $(GENOMESTRIP_SVTOOLKIT_DIR)/ref/human_g1k_v37.chr22.mask.100.fasta
  −
  GENOMESTRIP_PLOIDY_MAP = $(GENOMESTRIP_SVTOOLKIT_DIR)/conf/humgen_g1k_v37_ploidy.chr22.map
  −
GENOMESTRIP_PARAM = $(GENOMESTRIP_SVTOOLKIT_DIR)/conf/genstrip_parameters.txt
   
</div>
 
</div>
 
</div>
 
</div>
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/12273"

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