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Revision as of 21:33, 10 December 2014
, 21:33, 10 December 2014→Setup your run environment
This will setup some environment variables to point you to
This will setup some environment variables to point you to
* Tutorial input files
* Tutorial input files
source /home/chaolong/LASER-Tutorial/setup.txt
source /net/seqshop-server/home/chaolong/LASER-Tutorial/setup.txt
* You won't see any output after running <code>source</code>
* You won't see any output after running <code>source</code>
** It silently sets up your environment
** It silently sets up your environment
What is in the setup.txt file:
What is in the setup.txt file:
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export GC=/home/mktrost/seqshop/gotcloud
export GC=/net/seqshop-server/home/mktrost/seqshop/gotcloud
export REF=/home/mktrost/seqshop/gotcloud/gotcloud.ref
export REF=/net/seqshop-server/home/mktrost/seqshop/gotcloud/gotcloud.ref
export HGDP=/home/chaolong/LASER-Tutorial/HGDP
export HGDP=/net/seqshop-server/home/chaolong/LASER-Tutorial/HGDP
export BAM=/home/chaolong/LASER-Tutorial/BAM
export BAM=/net/seqshop-server/home/chaolong/LASER-Tutorial/BAM
export LASER=/home/chaolong/LASER-Tutorial/LASER-2.01
export LASER=/net/seqshop-server/home/chaolong/LASER-Tutorial/LASER-2.01
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