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, 22:05, 11 December 2014
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| == Setup == | | == Setup == |
− | <div class="mw-collapsible mw-collapsed" style="width:600px"> | + | <div class="mw-collapsible" style="width:600px"> |
− | ''If you are not already logged in, please expand this section.'' | + | ''If you are already logged in, you can skip this section.'' |
| <div class="mw-collapsible-content"> | | <div class="mw-collapsible-content"> |
| {{SeqShopLogin}} | | {{SeqShopLogin}} |
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| Resume screen: | | Resume screen: |
| screen -r | | screen -r |
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| + | |
| + | <div class="mw-collapsible mw-collapsed" style="width:700px"> |
| + | '''Only if your snpcalling is still running, let Mary Kate know, expand, and follow these instructions''' |
| + | <div class="mw-collapsible-content"> |
| + | * Detach from screen |
| + | Ctrl-a d |
| + | * Start new screen |
| + | screen |
| + | * Reset environment variables (replace SampleXX with your sample name) |
| + | export SAMPLE=SampleXX |
| + | source /net/seqshop-server/home/mktrost/seqshop/setupSS.txt |
| + | * When you detach from screen and reattach, you will have multiple screen sessions |
| + | ** The ancestry one will have today's date, the snpcall one will have an earlier date. |
| + | *** Mary Kate can explain how to reattach to a specific session when we get there. |
| + | </div> |
| + | </div> |
| + | |
| + | |
| + | '''Instructions for everyone: Setup LASER''' |
| | | |
| Source the LASER setup: | | Source the LASER setup: |