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Comparison with other data sets
It is usually useful to examine the call sets against known data sets for the passed variants.
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''Command to use at SeqShop Workshop:''
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${GC}/bin/vt profile_indels -g ${SS}/ref22/indel.reference.txt -r ${SS}/ref22/human.g1k.v37.chr22.fa ${OUT}/indel/final/all.genotypes.vcf.gz -i 22:36000000-37000000 -f "PASS"
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