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Revision as of 17:25, 17 December 2014
, 17:25, 17 December 2014→Setup when running on your own outside of the SeqShop Workshop
<li>Using bash (replace the paths below with the appropriate paths):</li>
<li>Using bash (replace the paths below with the appropriate paths):</li>
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:<pre>export REF=$SS/ancestry/ref export HGDP=$SS/ancestry/HGDP export BAM=$SS/ancestry/BAM</pre>
:<pre>export LASER=$OUT/LASER-2.01 export REF=$SS/ancestry/ref export HGDP=$SS/ancestry/HGDP export BAM=$SS/ancestry/BAM</pre>
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<li>Using tcsh (replace the paths below with the appropriate paths):</li>
<li>Using tcsh (replace the paths below with the appropriate paths):</li>
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:<pre>setenv REF $SS/ancestry/ref setenv HGDP $SS/ancestry/HGDP setenv BAM $SS/ancestry/BAM</pre>
:<pre>setenv LASER $OUT/LASER-2.01 setenv REF $SS/ancestry/ref setenv HGDP $SS/ancestry/HGDP setenv BAM $SS/ancestry/BAM</pre>
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