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This wiki page is designed to give users a detailed explanation on Minimac3 Usage.
This wiki page is designed to give users a detailed explanation on Minimac3 Usage.
= Command Line Options =
= Command Line Options =
[NOTE: If parameter estimates are found in <code>M3VCF</code> files, Minimac3 will automatically use them for imputation. Users should use handle <code>--updateModel</code> in order to update the parameter estimates using the target/gwas panel as well. However, this is NOT necessary in most cases, unless the user has strong reasons to believe that this might increase the imputation accuracy.]
[NOTE: If parameter estimates are found in <code>M3VCF</code> files, Minimac3 will automatically use them for imputation. Users should use handle <code>--updateModel</code> in order to update the parameter estimates using the target/gwas panel as well. However, this is NOT necessary in most cases, unless the user has strong reasons to believe that this might increase the imputation accuracy.]
= Download =
'''Minimac3 ''' is available as an undocumented release version. The source files are available for download here and commonly used reference panels in <code>M3VCF</code> format are available for download in [[#Reference Panels for Download | Reference Panels]].
* To Download Minimac3
{| class="wikitable" border="1" cellpadding="2"
|- bgcolor="lightgray"
! Description
! Download Link
|-
| Minimac3 Executable
| [[Media : Minimac3.v1.0.0.binary.tar.gz | UNIX Users ]]
|-
| Minimac3-omp Executable (for parallel computing)
| [[Media : Minimac3.v1.0.0.binary-OMP.tar.gz | UNIX Users ]]
|-
| Minimac3 Source Files
| [[Media : Minimac3.v1.0.0.tar.gz | UNIX Users ]]
|}
