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[NOTE: While doing imputation, if parameter estimates are found in <font face=Courier>M3VCF</font> files, Minimac3 will automatically use them for imputation. Users should use handle <font face=Courier>--updateModel</font> in order to update the parameter estimates using the target/gwas panel as well. However, this is NOT necessary in most cases, unless the user has strong reasons to believe that this might increase the imputation accuracy.]
[NOTE: While doing imputation, if parameter estimates are found in <font face=Courier>M3VCF</font> files, Minimac3 will automatically use them for imputation. Users should use handle <font face=Courier>--updateModel</font> in order to update the parameter estimates using the target/gwas panel as well. However, this is NOT necessary in most cases, unless the user has strong reasons to believe that this might increase the imputation accuracy.]
== Subset Parameters ==
== Remaining Parameters ==
The subset parameters are required if the user wishes to
The subset parameters are required if the user wishes to
== Subset Parameters ==
== Starting Parameters ==
== Starting Parameters ==
