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RAREFY DOCUMENTATION

243 bytes added, 19:37, 16 February 2015

→‎EXAMPLES

*To inverse Normalize the phenotype before analysis:

rarefy --ped your.ped --dat your.dat --traitIncreasing --traitDecreasing --inverseNormal --prefix your.output.prefix

*To inverse Normalize the phenotype and then adjust covariates saved in PED/DAT file before RAREFY analysis:

rarefy --ped your.ped --dat your.dat --traitIncreasing --traitDecreasing --inverseNormal --useCovariates --prefix your.output.prefix

*To analyze only a subset of families in the sample:

rarefy --ped your.ped --dat your.dat --traitIncreasing --traitDecreasing --famList your.file.with.famID --prefix your.output.prefix

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