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From Genome Analysis Wiki
→--effect
===--maf===
[your.preferred.frequency.value]:default is 0.001; this option let you change the value of the fixed prior frequency of a trait-associated variant of interest.
===--effect===
[your.preferred.effect.size]:default is 1 standard deviation; this option let you change the value of the fixed prior effect size of a trait-associated variant of interest.
