3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Official Releases
'''LibStatGen.1.0.12 Release Notes'''
'''LibStatGen.1.0.13 Release Notes'''
*Version 1.0.13 - Released 2/20/2015
** https://github.com/statgen/libStatGen/archive/v1.0.13.tar.gz
** Contains classes for general processing (string, reference file, parameters), bam, glf, fastq, and vcf
*** General Updates:
**** Added knetfile support to InputFile (only for bgzf files if KNET_ON=1 is set on compile line
**** GzipHeader - fix signed/unsigned comparison compile issue
**** Upgrade bgzf (also allow append mode)
*** Makefiles Updates:
**** Update dependencies to fix/improve some compiling issues
*** PhoneHome Updates:
**** Allow PhoneHome to be a legacy parameter
**** Update new version available message to stand out more
**** Fix bugs in checks for new version since it wasn't finding it.
*** BAM Updates:
**** SamReferenceInfo operator== - fix to not check hash, since hash could be different for same info
**** Pileup - improve error message for buffer overrun
*** VCF Updates:
**** Add option to update GT field
**** Add subset samples parameter to ReadRecord
**** Improve handling of adding CO header
''' Older Releases'''
*[[Media:LibStatGen.1.0.12.tgz|LibStatGen.1.0.12.tgz]] - Released 5/14/2014
*[[Media:LibStatGen.1.0.12.tgz|LibStatGen.1.0.12.tgz]] - Released 5/14/2014
** Contains classes for general processing (string, reference file, parameters), bam, glf, fastq, and vcf
** Contains classes for general processing (string, reference file, parameters), bam, glf, fastq, and vcf
*** BAM Updates:
*** BAM Updates:
**** Update rmTags & getTagsString to accept ',' delimiter rather than just ';'
**** Update rmTags & getTagsString to accept ',' delimiter rather than just ';'
*[[Media:LibStatGen.1.0.11.tgz|LibStatGen.1.0.11.tar.gz]] - Released 2/28/2014
*[[Media:LibStatGen.1.0.11.tgz|LibStatGen.1.0.11.tar.gz]] - Released 2/28/2014
** Contains classes for general processing (string, reference file, parameters), bam, glf, fastq, and vcf
** Contains classes for general processing (string, reference file, parameters), bam, glf, fastq, and vcf
