Changes

* [[BamUtil: revert|revert]] - Revert SAM/BAM replacing the specified fields with their previous values (if known) and removes specified tags

* [[BamUtil: revert|revert]] - Revert SAM/BAM replacing the specified fields with their previous values (if known) and removes specified tags

* [[BamUtil: squeeze|squeeze]] -  Reduce file size by dropping OQ fields, duplicates, & specified tags, using '=' when a base matches the reference, binning quality scores, and replacing readNames with unique integers

* [[BamUtil: squeeze|squeeze]] -  Reduce file size by dropping OQ fields, duplicates, & specified tags, using '=' when a base matches the reference, binning quality scores, and replacing readNames with unique integers

* [[BamUtil: trimBam|trimBam]] - Trim the ends of reads in a SAM/BAM file changing read ends to 'N' and quality to '!'

* [[BamUtil: trimBam|trimBam]] - Trim the ends of reads in a SAM/BAM file changing read ends to 'N' and quality to '!' or by doing soft clips

* [[BamUtil: mergeBam|mergeBam]] - Merge multiple BAMs and headers appending ReadGroupIDs if necessary

* [[BamUtil: mergeBam|mergeBam]] - Merge multiple BAMs and headers appending ReadGroupIDs if necessary

* [[BamUtil: polishBam|polishBam]] - Add/update header lines & add the RG tag to each record

* [[BamUtil: polishBam|polishBam]] - Add/update header lines & add the RG tag to each record