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= Overview of the <code>trimBam</code> function of <code>bamUtil</code> =
= Overview of the <code>trimBam</code> function of <code>bamUtil</code> =
The <code>trimBam</code> option on the [[bamUtil]] executable trims the end of reads in a SAM/BAM file, changing read ends to ‘N’ and quality to ‘!’.
The <code>trimBam</code> option on the [[bamUtil]] executable trims the end of reads in a SAM/BAM file, changing read ends to ‘N’ and quality to ‘!’, or by soft clipping (if command-line option, <code>--clip</code> is specified).
= Usage =
= Usage =
