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, 11:36, 9 March 2015
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| === Ignore the Strand when Trimming (<code>--ignoreStrand</code> or <code>-i</code>) === | | === Ignore the Strand when Trimming (<code>--ignoreStrand</code> or <code>-i</code>) === |
− | Use <code>--ignoreStrand</code> or <code>--i</code> to ignore the strand information and treat forward/reverese the same. When <code>--ignoreStrand</code> or <code>--i</code> is set, do not reverse reverse reads prior to trimming left/right. | + | Use <code>--ignoreStrand</code> or <code>-i</code> to ignore the strand information and treat forward/reverse the same. When <code>--ignoreStrand</code> or <code>-i</code> is set, do not reverse reverse reads prior to trimming left/right. |
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| === SoftClip the Ends (<code>--clip</code> or <code>-c</code>) === | | === SoftClip the Ends (<code>--clip</code> or <code>-c</code>) === |