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SeqShop: May 2015

57 bytes added, 10:40, 22 May 2015
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{| class="wikitable" cellpadding=5
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! style="background:#ABE" | Monday !! stylecolspan="background:#ABE3" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''Monday
|-
! style="background:#ABE" | Lecture !! style="background:#ABE" |Practical !! style="background:#ABE" | ''Own Genome Analysis''|-| [[Media:20142015.12_05 -_Workshop_IntroductionWorkshop Intro.pdf|Brief Introduction and BackgroundWelcome/Design of Human Genetic Studies]]| [[Media:Dec2014 May2015 SeqShop - Linux.pdf|SeqShop: Quick intro to Linux]]|rowspan="32" | ''[[SeqShop: Aligning Your Own Genome, December 2014May 2015|SeqShop: Aligning Your Own Genome]]''
|-
|| [[Media:Sequencing symposium 2014Mapping and assembly May2015.pptxpdf|Design of Human Genetic StudiesSequence Mapping and Assembly]]
| [[SeqShop: Sequence Mapping and Assembly Practical, May 2015|SeqShop: Sequence Mapping and Assembly Practical]]
|-
|| [[Media! style="background:Mapping and assemblyDec2014.pdf#ABE" colspan="3" |Sequence Mapping and Assembly]]| [http://bam.iobio.io iobio: Visualizing BAM statistics]Tuesday
|-
! style="background:#ABE" | Tuesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
|-
|| [[Media:seqshop_dec14_day2_snp_lecture_v2seqshop_may_2015_day2_snp_lecture_v2.pdf|Variant Calling and Filtering for SNPs]]
| [[SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015|SeqShop: Variant Calling and Filtering for SNPs Practical]]
[http://bam.iobio.io iobio: Visualizing BAM statistics]| rowspan="2"|''[[SeqShop: Calling Your Own Genome, December 2014May 2015|SeqShop: Calling Your Own Genome]]''
|-
|| [[Media:Dec2014 Analysis of SVMay2015.pdf|Analysis of Structural Variation - Part 1]][[Media:Dec2014 May2015 Analysis of SV part 2.pdf|Analysis of Structural Variation - Part 2]]
| [[SeqShop: Analysis of Structural Variation Practical, May 2015|SeqShop: Analysis of Structural Variation Practical]]
|-
! style="background:#ABE" colspan="3" | Wednesday !|-! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
|-
|| [[Media:Seqshop 2015 non-SNP variation.pdf|Variant Calling and Filtering for INDELs]] [[Media:seqshop_2015_day3_indel_assembly.pdf|Variant Calling and Filtering for INDELsMore Lessons on Indels + De-novo Assembly Methods]] 
| [[SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015|SeqShop: Variant Calling and Filtering for INDELs Practical]]
|''[[SeqShop: Calling Your Own Genome, December 2014May 2015|SeqShop: Calling Your Own Genome]]''
|-
! style="background:#ABE" | Thursday !! stylecolspan="background:#ABE3" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''Thursday
|-
! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
|-
| [[Media:Stratification.pptx|Estimates of Genetic Ancestry]]
|[[SeqShop: Estimates of Genetic Ancestry Practical, May 2015| SeqShop: Estimates of Genetic Ancestry Practical]]
|
| [[Media:DecWorshop2014-ancestry.pdf|Estimates of Genetic Ancestry]]
|[[SeqShop: Estimates of Genetic Ancestry Practical, May 2015| SeqShop: Estimates of Genetic Ancestry Practical]]
|rowspan="2" |
|-
|| [[Media:Seqshop genetic association analysis 141211150521.pdfpptx|Genetic Association Analysis]]
|[[SeqShop: Association Analysis, May 2015| SeqShop: Association Analysis]]
|''[[SeqShop: Calling Your Own Genome, May 2015|SeqShop: Calling Your Own Genome]]''|-! style="background:#ABE" colspan="3" | Friday
|-
! style="background:#ABE" | Friday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
|-
| [[Media:2015.05_-_Workshop_Closing.pdf|Summary]]
|
| [[Media:2014.12_-_Workshop_Closing.pdf|Example of a Whole Genome Association Study]]||rowspan="2"|''[[SeqShop: Ancestry On Your Own Genome, December 2014May 2015|SeqShop: Ancestry On Your Own Genome]]''
|-
|}
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