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-v -> output SAM record in which mismatched bases exist
-v -> output SAM record in which mismatched bases exist
-g -> output in GNU Plot code, you can pipe the output using '|gnuplot'
-g -> output in GNU Plot code, you can pipe the output using '|gnuplot'
-r -> output in R code, you can pipe the output using '|Rscript --vanilla - '
-R -> output in R code, you can pipe the output using '|Rscript --vanilla - '
Example:
Example:
