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Revision as of 17:18, 15 May 2015
, 17:18, 15 May 2015→Genotype Refinement Output
* Rerun the tabix command and scroll to find HG00551's genotype:
* Rerun the tabix command and scroll to find HG00551's genotype:
${GC}/bin/tabix ${OUT}/thunder/chr22/ALL/thunder/chr22.filtered.PASS.beagled.ALL.thunder.vcf.gz 22:36907000-36907100 |less -S
${GC}/bin/tabix ${OUT}/thunder/chr22/ALL/thunder/chr22.filtered.PASS.beagled.ALL.thunder.vcf.gz 22:36907000-36907100 |less -S
* Or you can do this to print HG00551 only:
${GC}/bin/tabix ${OUT}/thunder/chr22/ALL/thunder/chr22.filtered.PASS.beagled.ALL.thunder.vcf.gz 22:36907000-36907100 | cut -f1-10
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