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Running GotCloud Indel
== Running GotCloud Indel ==
${GC}/gotcloud indel --conf ${SS}/gotcloud.conf --numjobs 6 3 --region 22:36000000-37000000 --base_prefix ${SS} --outdir ${OUT}
* <code>${GC}/gotcloud</code> runs GotCloud
* <code>indel</code> tells GotCloud you want to run the indel calling pipeline.

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