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SeqShop: Ancestry On Your Own Genome, May 2015

30 bytes added, 14:26, 21 May 2015
Estimate ancestry
For European ancestry:
$LASER/laser -g $HGDP/HGDP/HGDP.633K.euro.geno -c $HGDP/HGDP/HGDP.633K.euro.RefPC.coord -s $OUT/ancestry/$SAMPLE.HGDP.seq -K 20 -k 4 -M 0.8 -o $OUT/ancestry/$SAMPLE.HGDP-Euro &
For East Asian ancestry:
$LASER/laser -g $HGDP/HGDP/HGDP.633K.easia.2.geno -c $HGDP/HGDP/HGDP.633K.easia.2.RefPC.coord -s $OUT/ancestry/$SAMPLE.HGDP.seq -K 20 -k 4 -M 0.8 -o $OUT/ancestry/$SAMPLE.HGDP-EAsia &
For Central/South Asian ancestry:
$LASER/laser -g $HGDP/HGDP/HGDP.633K.csasia.2.geno -c $HGDP/HGDP/HGDP.633K.csasia.2.RefPC.coord -s $OUT/ancestry/$SAMPLE.HGDP.seq -K 20 -k 4 -M 0.8 -o $OUT/ancestry/$SAMPLE.HGDP-CSAsia &

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