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SeqShop: Ancestry On Your Own Genome, May 2015

18 bytes added, 14:57, 21 May 2015
Visualizing Ancestry
Generate the plot for European ancestry:
Rscript plotHGDP.r $SSREF/HGDP/HGDP.633K.euro.RefPC.coord $OUT/ancestry/${SAMPLE}.HGDP-Euro.SeqPC.coord
or for East Asian ancestry
Rscript plotHGDP.r $SSREF/HGDP/HGDP.633K.easia.2.RefPC.coord $OUT/ancestry/${SAMPLE}.HGDP-EAsia.SeqPC.coord
or for Central/South Asian ancestry
Rscript plotHGDP.r $SSREF/HGDP/HGDP.633K.csasia.2.RefPC.coord $OUT/ancestry/${SAMPLE}.HGDP-CSAsia.SeqPC.coord
Take a look:

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