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Revision as of 09:25, 22 May 2015
, 09:25, 22 May 2015→Annotation / Lookup against dbSNP
If you want to run this command across all chromosomes in parallel, you can use the special script run-command-wgs
If you want to run this command across all chromosomes in parallel, you can use the special script run-command-wgs
$HK/run-command-wgs --cmd "$HK/vcf-add-rsid -vcf $OUT/vcfs/chr1/chr1.filtered.vcf.gz --db $HK/../data/dbSNP.b138/dbsnp_138.b37.vcf.gz --out $OUT/vcfs/chr1/chr1.filtered.rsid.vcf.gz" --numjobs 6
$HK/run-make --repeat-chr --cmd "$HK/vcf-add-rsid -vcf $OUT/vcfs/chr1/chr1.filtered.vcf.gz --db $HK/../data/dbSNP.b138/dbsnp_138.b37.vcf.gz --out $OUT/vcfs/chr1/chr1.filtered.rsid.vcf.gz" --numjobs 6
Looking up SNPs by rsID is possible by (for example)
Looking up SNPs by rsID is possible by (for example)
