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SeqShop: Calling Your Own Genome, May 2015

19 bytes added, 10:25, 22 May 2015
Annotation / Lookup against dbSNP
If you want to run this command across all chromosomes in parallel, you can use the special script run-command-wgs
$HK/run-make --repeat-chr --cmd "$HK/vcf-add-rsid -vcf $OUT/vcfs/chr1/chr1.filtered.vcf.gz --db $HK/../data/dbsnp_142.b37.vcf.gz --out $OUT/vcfs/chr1/chr1.filtered.rsid.vcf.gz" --numjobs 6--out runmake.rsid
Looking up SNPs by rsID is possible by (for example)

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