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, 11:20, 22 May 2015
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| Or you can run multiple chromosomes in parallel in one command | | Or you can run multiple chromosomes in parallel in one command |
− | $HK/run-make --repeat-chr --cmd "$EPACTS/bin/epacts anno --in $OUT/vcfs/chr1/chr1.filtered.rsid.vcf.gz --out $OUT/vcfs/chr1/chr1.filtered.rsid.anno.vcf.gz" --numjobs 6 --out runmake.anno | + | $HK/run-make --repeat-chr --cmd "$EPACTS/bin/epacts anno --in $OUT/vcfs/chr1/chr1.filtered.rsid.vcf.gz --out $OUT/vcfs/chr1/chr1.filtered.rsid.anno.vcf.gz" --numjobs 6 --out runmake.anno --autosomes |
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| ==== Extracting only exonic SNPs ==== | | ==== Extracting only exonic SNPs ==== |