1,120
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchSeqShop: Calling Your Own Genome, May 2015 (view source)
Revision as of 11:21, 22 May 2015
, 11:21, 22 May 2015→Annotating your genome
Or you can run multiple chromosomes in parallel in one command
Or you can run multiple chromosomes in parallel in one command
$HK/run-make --repeat-chr --cmd "$EPACTS/bin/epacts anno --in $OUT/vcfs/chr1/chr1.filtered.rsid.vcf.gz --out $OUT/vcfs/chr1/chr1.filtered.rsid.anno.vcf.gz" --numjobs 6 --out runmake.anno --autosomes
$HK/run-make --repeat-chr --cmd "$EPACTS/bin/epacts anno --in $OUT/vcfs/chr1/chr1.filtered.rsid.vcf.gz --out $OUT/vcfs/chr1/chr1.filtered.rsid.anno.vcf.gz" --numjobs 6 --out runmake.anno
==== Extracting only exonic SNPs ====
==== Extracting only exonic SNPs ====
