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#vt cannot retrieve sequences from my reference sequence file ====
#vt cannot retrieve sequences from my reference sequence file ====
It is common to encounter an error where the
It is common to use reference files based on UCSC browser and from the Genome Reference Consortium.
For example, HG19 vs GrCH37. The key difference is that chromosome 1 is represented as chr1 and 1
respectively in the FASTA files from these 2 sources. Just use the appropriate FASTA file that was used
to generate your VCF file in originally.
== Resource Bundle ==
== Resource Bundle ==
