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, 12:09, 27 May 2015
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| ====1. vt cannot retrieve sequences from my reference sequence file==== | | ====1. vt cannot retrieve sequences from my reference sequence file==== |
− | It is common to use reference files based on the UCSC browser's database and from the Genome Reference Consortium.
| |
− | For example, HG19 vs GrCH37. The key difference is that chromosome 1 is represented as chr1 and 1 respectively in the
| |
− | FASTA files from these 2 sources. <br>
| |
− | Just use the appropriate FASTA file that was used to generate your VCF file in originally.
| |
− |
| |
− | #vt cannot retrieve sequences from my reference sequence file
| |
− | It is common to use reference files based on the UCSC browser's database and from the Genome Reference Consortium.
| |
− | For example, HG19 vs GrCH37. The key difference is that chromosome 1 is represented as chr1 and 1 respectively in the
| |
− | FASTA files from these 2 sources. <br>
| |
− | Just use the appropriate FASTA file that was used to generate your VCF file in originally.
| |
− |
| |
− | #vt cannot retrieve sequences from my reference sequence file
| |
− | It is common to use reference files based on the UCSC browser's database and from the Genome Reference Consortium.
| |
− | For example, HG19 vs GrCH37. The key difference is that chromosome 1 is represented as chr1 and 1 respectively in the
| |
− | FASTA files from these 2 sources. <br>
| |
− | Just use the appropriate FASTA file that was used to generate your VCF file in originally.
| |
− |
| |
− | #vt cannot retrieve sequences from my reference sequence file
| |
− | It is common to use reference files based on the UCSC browser's database and from the Genome Reference Consortium.
| |
− | For example, HG19 vs GrCH37. The key difference is that chromosome 1 is represented as chr1 and 1 respectively in the
| |
− | FASTA files from these 2 sources. <br>
| |
− | Just use the appropriate FASTA file that was used to generate your VCF file in originally.
| |
− |
| |
− | #vt cannot retrieve sequences from my reference sequence file
| |
− | It is common to use reference files based on the UCSC browser's database and from the Genome Reference Consortium.
| |
− | For example, HG19 vs GrCH37. The key difference is that chromosome 1 is represented as chr1 and 1 respectively in the
| |
− | FASTA files from these 2 sources. <br>
| |
− | Just use the appropriate FASTA file that was used to generate your VCF file in originally.
| |
− |
| |
− | #vt cannot retrieve sequences from my reference sequence file
| |
| It is common to use reference files based on the UCSC browser's database and from the Genome Reference Consortium. | | It is common to use reference files based on the UCSC browser's database and from the Genome Reference Consortium. |
| For example, HG19 vs GrCH37. The key difference is that chromosome 1 is represented as chr1 and 1 respectively in the | | For example, HG19 vs GrCH37. The key difference is that chromosome 1 is represented as chr1 and 1 respectively in the |