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Vt

369 bytes added, 09:58, 22 June 2015
Filters
Passed variants in intergenic regions or UTR : PASS&&INFO.ANNO=~'Intergenic|UTR'
Passed variants in intergenic regions or UTR ignoring case : PASS&&INFO.ANNO=~'(?i)Intergenic|UTR'<br>
pcre2's '(?i)Intergenic|UTR' is equivalent to PERL's '/intergenic|UTR/i'
Operations
==,: equivalence for strings and numbers !=,: not equal =~ : regular expression match for strings only ~~ : not of =~. Is equivalent to is PERL's !~,this notation is used as BASH keeps interpreting ! for recalling commands from the history ~, : logical not &&,: logical and ||,: logical or &, : bitwise and |, : bitwise or +, : add -, : subtract *, : multiply / : divide
The motivation in this case is because Indels are a heterogeneous set of variants and thus we usually examine them
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