Changes

From Genome Analysis Wiki
Jump to: navigation, search

LiftOver

40 bytes removed, 17:33, 15 July 2015
Resources
== Resources ==
* liftRsNumber.py [[liftRsNumber.py]] and its interal location: /net/dumbo/net/dumbofantasia/home/zhanxw/amd/analyze/verifyBamID/liftRsNumber.py
* liftMap.py [[liftMap.py]]
* NCBI provisional map [ftp://ftp.ncbi.nih.gov:/snp/organisms/human_9606/misc/exchange/Remap_36_3_37_1.txt.gz file] and [ftp://ftp.ncbi.nih.gov:/snp/organisms/human_9606/misc/exchange/Remap_36_3_37_1.info info]
* NCBI RgMergeArch [ftp://ftp.ncbi.nih.gov:/snp/organisms/human_9606/database/organism_data/RsMergeArch.bcp.gz file] and [http://www.ncbi.nlm.nih.gov/SNP/snp_db_table_description.cgi?t=RsMergeArch schema]
* NCBI SNPHistory [ftp://ftp.ncbi.nih.gov:/snp/organisms/human_9606/database/organism_data/SNPHistory.bcp.gz file] and [http://www.ncbi.nlm.nih.gov/SNP/snp_db_table_description.cgi?t=SNPHistory schema]
* NCBI SNPChrPosOnRef build 132 [ftphttp://ftpqbrc.ncbiswmed.nih.gov:edu/snpzhanxw/organisms/human_9606/database/b132_archivesoftware/organism_dataliftOver/b132_SNPChrPosOnRef_37_1.bcp.gz file] and [http://www.ncbi.nlm.nih.gov/SNP/snp_db_table_description.cgi?t=SNPChrPosOnRef schema]. If this link becomes unavailable, please consider using the this updated file ([ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/database/organism_data/b141_SNPChrPosOnRefb144_SNPChrPosOnRef_107.bcp.gz link]).
* How UCSC dbSNP differs from NCBI dbSNP [http://genomewiki.ucsc.edu/index.php/DbSNP_Track_Notes UCSC dbSNP track note]
255
edits

Navigation menu