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Revision as of 14:28, 31 August 2015
, 14:28, 31 August 2015→Overall Pipeline Definition: spelling
* NO_CRAM - do not allow CRAM files as input
* NO_CRAM - do not allow CRAM files as input
* MAKE_BASE_NAME_PIPE - base makefile name
* MAKE_BASE_NAME_PIPE - base makefile name
* MAKE_OPTS - otpions to pass to the make command that runs the jobs.
* MAKE_OPTS - options to pass to the make command that runs the jobs.
* BAM_DEPEND - set to TRUE if you want the BAM file to be included as a make dependency
* BAM_DEPEND - set to TRUE if you want the BAM file to be included as a make dependency
