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82 bytes removed
, 12:38, 3 September 2015
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| | | |
| #this is a sample output for indel profiling. | | #this is a sample output for indel profiling. |
− | # square brackets contain the ins/del ratio. | + | # square brackets contain the ts/tv ratio. |
− | # for the FS/NFS field, that is the proportion of coding indels that are frame shifted.
| + | # The numbers in curved bracket are the counts of ts and tv SNPs respectively. |
− | # The numbers in curved bracket are the counts of frame shift and non frame shift indels respectively. | + | # Low complexity shows what percent of the SNPs are in low complexity regions. |
| data set | | data set |
| No. SNPs : 508603 [2.09] | | No. SNPs : 508603 [2.09] |
− | SYN/NONSYN : 1.00 (4617/0)
| |
| Low complexity : 0.08 (39837/508603) <br> | | Low complexity : 0.08 (39837/508603) <br> |
| 1000g | | 1000g |