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Minimac3 - Full List of Options

220 bytes added, 02:13, 11 September 2015
Full List of Options
|-
| <font face=Courier>--format</font>
| Specifies which fields to output for the FORMAT field in output VCF file. Available handles: <font face=Courier>GT,DS,GP </font>[Default: <font face=Courier>GT,DS</font>]|-| <font face=Courier>--allTypedSites</font>| Also Includes variants that were genotyped but NOT in the reference panel in the output files (and imputes any missing data in such variants to the major allele frequency).
|-
| <font face=Courier>--chr 22</font>
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