From Genome Analysis Wiki
→1. vt cannot retrieve sequences from my reference sequence file
For example, HG19 vs Grch37. The key difference is that chromosome 1 is represented as chr1 and 1 respectively in the
FASTA files from these 2 sources. Just use the appropriate FASTA file that was used to generate your VCF file originally.
= Maintained by =
This page is maintained by [mailto:firstname.lastname@example.org Adrian]