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, 21:35, 21 September 2015
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| For example, HG19 vs Grch37. The key difference is that chromosome 1 is represented as chr1 and 1 respectively in the | | For example, HG19 vs Grch37. The key difference is that chromosome 1 is represented as chr1 and 1 respectively in the |
| FASTA files from these 2 sources. Just use the appropriate FASTA file that was used to generate your VCF file originally. | | FASTA files from these 2 sources. Just use the appropriate FASTA file that was used to generate your VCF file originally. |
| + | |
| + | Another common issue is due to the corruption with the indexed file of the reference sequence, say for a reference file named |
| + | hs37d5.fa or hs37d5.fa.gz, simply delete the index file denoted by hs37d5.fa.fai or hs37d5.fa.gz.fai and run the vt command |
| + | again. A new index file will be generated automatically. |
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| = Maintained by = | | = Maintained by = |
| | | |
| This page is maintained by [mailto:atks@umich.edu Adrian] | | This page is maintained by [mailto:atks@umich.edu Adrian] |