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, 19:39, 5 October 2015
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| #annotates indels from VCFs with VNTR information. | | #annotates indels from VCFs with VNTR information. |
| vt annotate_indels in.vcf -r hs37d5.fa -o annotated.sites.vcf | | vt annotate_indels in.vcf -r hs37d5.fa -o annotated.sites.vcf |
| + | |
| + | {{scroll box| |
| + | * Example 01 |
| + | * Example 02 |
| + | * Example 03 |
| + | * Example 04 |
| + | * Example 05 |
| + | * Example 06 |
| + | * Example 07 |
| + | * Example 08 |
| + | * Example 09 |
| + | * Example 10 |
| + | * Example 11 |
| + | * Example 12 |
| + | * Example 13 |
| + | * Example 14 |
| + | |
| + | }} |
| + | {{scroll box|text= |
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| 20 82079 . G A 1255.98 . NSAMPLES=1;E=43;N=51;ESUM=43;NSUM=51;FLANKSEQ=GGAGCACGCC[G/A]CCATGCCCGG | | 20 82079 . G A 1255.98 . NSAMPLES=1;E=43;N=51;ESUM=43;NSUM=51;FLANKSEQ=GGAGCACGCC[G/A]CCATGCCCGG |
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| 20 100699 . C T 809.09 . NSAMPLES=1;E=28;N=61;ESUM=28;NSUM=61;FLANKSEQ=GGTGAAAAAT[C/T]ACCTGTCAGT | | 20 100699 . C T 809.09 . NSAMPLES=1;E=28;N=61;ESUM=28;NSUM=61;FLANKSEQ=GGTGAAAAAT[C/T]ACCTGTCAGT |
| 20 101362 . G A 1087.13 . NSAMPLES=1;E=36;N=67;ESUM=36;NSUM=67;FLANKSEQ=TAATACTGAA[G/A]TTTACTTCTC | | 20 101362 . G A 1087.13 . NSAMPLES=1;E=36;N=67;ESUM=36;NSUM=67;FLANKSEQ=TAATACTGAA[G/A]TTTACTTCTC |
| + | |
| + | }} |
| | | |
| The following shows the trace of how the algorithm works | | The following shows the trace of how the algorithm works |