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Talk:GotCloud (view source)

Revision as of 23:49, 7 January 2016

339 bytes added ,  23:49, 7 January 2016
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The main page is http://genome.sph.umich.edu/wiki/GotCloud .
 
The main page is http://genome.sph.umich.edu/wiki/GotCloud .
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Setup pages:
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Setup instructions:
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Binary_Releases
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Binary_Releases
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Source_Releases
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Source_Releases
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Documentation of steps in the GotCloud pipeline:
 
Documentation of steps in the GotCloud pipeline:
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* http://genome.sph.umich.edu/wiki/GotCloud:_Genetic_Reference_and_Resource_Files (documentation and instructions)
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Pipeline
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Pipeline
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Options
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Options
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Filters
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Filters
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Configuration:
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* http://genome.sph.umich.edu/wiki/Configure_GotCloud (mainly covers <code>BATCH_OPTS</code>)
    
Tutorials:
 
Tutorials:
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* http://genome.sph.umich.edu/wiki/Amazon_Snapshot
 
* http://genome.sph.umich.edu/wiki/Amazon_Snapshot
 
* http://genome.sph.umich.edu/wiki/Creating_a_Snapshot_on_EC2
 
* http://genome.sph.umich.edu/wiki/Creating_a_Snapshot_on_EC2
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* http://genome.sph.umich.edu/wiki/GotCloud:_Reference_Files (<code>FA_REF</code> has since been renamed.)
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