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** http://genome.sph.umich.edu/wiki/StarCluster
** http://genome.sph.umich.edu/wiki/StarCluster
Documentation of pieces of GotCloud:
Documentation of steps in the GotCloud pipeline:
* http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline
* http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline
** http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Sub-Pipelines
** http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Sub-Pipelines
* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Pipeline
* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Pipeline
* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Options
* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Options
* http://genome.sph.umich.edu/wiki/GotCloud:_GenomeSTRiP_Pipeline
* http://genome.sph.umich.edu/wiki/GotCloud:_Creating_a_New_Pipeline
Documentation of pieces of GotCloud:
* http://genome.sph.umich.edu/wiki/PileupBasedVariantCalling
* http://genome.sph.umich.edu/wiki/PileupBasedVariantCalling
* http://genome.sph.umich.edu/wiki/GotCloud:_Filters
* http://genome.sph.umich.edu/wiki/GotCloud:_Filters
* http://genome.sph.umich.edu/wiki/Understanding_QPLOT_output
* http://genome.sph.umich.edu/wiki/Understanding_QPLOT_output
* http://genome.sph.umich.edu/wiki/Understanding_vcf-summary_output
* http://genome.sph.umich.edu/wiki/Understanding_vcf-summary_output
* http://genome.sph.umich.edu/wiki/GotCloud:_GenomeSTRiP_Pipeline
* http://genome.sph.umich.edu/wiki/GotCloud:_Genetic_Reference_and_Resource_Files (documentation and instructions)
Configuration:
Configuration:
