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MIN_NEIGHBOR_NUM = 500
MIN_NEIGHBOR_NUM = 500
BEDFILE_IS_SORTED = True
BEDFILE_IS_SORTED = True
BATCHTYPE = slurm
BATCHOPTS = --partition=main --time=0:30:0
In the config file, there are several parameters to adjust:
In the config file, there are several parameters to adjust:
BEDFILE_IS_SORTED: True or false, depending on whether the BED files listed in the index file are sorted.
BEDFILE_IS_SORTED: True or false, depending on whether the BED files listed in the index file are sorted.
BATCHTYPE: We have three options for this parameter. When you run GREGOR on local machine, specify "local"; when run on MOSIX system, specify "mosix"; when run on SLURM system, specify "slurm".
BATCHOPTS: This parameter works with BATCHTYPE when you specify "mosix" or "slurm". For example, when you define mosix, this parameter can be "-E/tmp -i -m2000 -j10,11,12,13,14,15,16 sh -c"; when you define "slurm", it can be "--partition=1000g --time=0:30:0"
== Results Output ==
== Results Output ==
