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96 bytes added
, 17:10, 10 February 2016
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| Variant characteristics | | Variant characteristics |
− | VTYPE,N_ALLELE,DLEN,LEN | + | VTYPE,N_ALLELE,DLEN,LEN,VARIANT_CONTAINS_N |
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| Variant value types | | Variant value types |
| SNP,MNP,INDEL,CLUMPED | | SNP,MNP,INDEL,CLUMPED |
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− | Biallelic SNPs only : VTYPE==SNP&&N_ALLELE==2 | + | Biallelic SNPs only : VTYPE==SNP&&N_ALLELE==2 |
− | Biallelic Indels with embedded SNP : VTYPE==(SNP|INDEL)&&N_ALLELE==2 | + | Biallelic Indels with embedded SNP : VTYPE==(SNP|INDEL)&&N_ALLELE==2 |
− | Biallelic variants involving insertions : VTYPE&INDEL&&DLEN>0&&N_ALLELE==2 | + | Biallelic variants involving insertions : VTYPE&INDEL&&DLEN>0&&N_ALLELE==2 |
− | Biallelic variants involving 1bp variants : LEN==1&&N_ALLELE==2 | + | Biallelic variants involving 1bp variants : LEN==1&&N_ALLELE==2 |
| + | Variants with explicit sequences with no Ns : ~VARIANT_CONTAINS_N |
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| QUAL field | | QUAL field |