Changes

From Genome Analysis Wiki
Jump to: navigation, search

Vt

172 bytes added, 16:25, 10 February 2016
Normalization
#normalize variants, send to standard out and remove duplicates.
vt normalize dbsnp.vcf -r seq.fa | vt uniq - -o dbsnp.normalized.uniq.vcf
 
#read in variants that do not contain N in the explicit alleles, normalize variants, send to standard out.
vt normalize dbsnp.vcf -r seq.fa -f "~VARIANT_CONTAINS_N"
#variants that are normalized will be annotated with an OLD_VARIANT info tag.
1,102
edits

Navigation menu