1,102
edits
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no coding 17911 (0.32%) #number of VNTRs in coding regions determined by GENCODE v7
no coding 17911 (0.32%) #number of VNTRs in coding regions determined by GENCODE v7
no redundant 1312209 (23.18%) #number of VNTRs involved in overlapping with one another<br>
no redundant 1312209 (23.18%) #number of VNTRs involved in overlapping with one another<br>
trf_lobstr (1638516) #TRF based reference set used in lobSTR, motif lengths 1 to 6.
trf_lobstr (1638516) #TRF based reference set used in lobSTR, motif lengths 1 to 6.
A-B 3269285
A-B 3269285 #TRs specific to vntrs.sites.bcf
A-B~ 1666185
A-B~ 1666185 #TRs in vntrs.sites.bcf that overlap partially with at least one TR in TRF(lobSTR) but does not overlap exactly with another TR.
A&B1 725404
A&B1 725404 #TRs in vntrs.sites.bcf that overlap exactly with at least one TR in TRF(lobSTR)
A&B2 723195
A&B2 723195 #TRs in TRF(lobSTR) that overlap exactly with at least one TR in vntrs.sites.bcf
B-A~ 710075
B-A~ 710075 #TRs in TRF(lobSTR) that overlap partially with at least one TR in vntrs.sites.bcf but does not overlap exactly with another TR.
B-A 205246 <br>
B-A 205246 #TRs specific to TRF(lobSTR)
#note that the first 3 rows should sum up to the number of TRs in vntrs.sites.bcf
#and the 4th to 6th rows should sum up to the number of TRs in TRF( lobSTR)
#This basically allows us to see the m to n overlapping in overlapping TRs<br>
trf_repeatseq (1624553) #TRF based reference set used in repeatseq, motif lengths 1 to 6.
trf_repeatseq (1624553) #TRF based reference set used in repeatseq, motif lengths 1 to 6.
A-B 3291652
A-B 3291652
