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A nice useful scheme is +2 for matches and -7 for indels and mismatches, and it provides a convenient way of scoring for purity.
 
A nice useful scheme is +2 for matches and -7 for indels and mismatches, and it provides a convenient way of scoring for purity.
   −
== Normalized scoring ==
+
== Inexact Tandem Repeats ==
    +
We see alot of this
    +
  AAAAAAAAAAAGAAAAAAAAAAAAAA
 +
 +
or
 +
 +
  ACACACACACACGACACACAACACACACACAC
 +
 +
or
 +
 +
  GAAAGAAGGAAAAGAGAGAAAAGAAGAAGAA
    
= Classification =  
 
= Classification =  
1,102

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