3,045
edits
Changes
From Genome Analysis Wiki
→Usage
= Usage =
./bam bam2FastQ --in <inputFile> [--readName] [--splitRG] [--qualField <tag>] [--refFile <referenceFile>] [--outBase <outputFileBase>] [--firstOut <1stReadInPairOutFile>] [--merge|--secondOut <2ndReadInPairOutFile>] [--unpairedOut <unpairedOutFile>] [--firstRNExt <firstInPairReadNameExtfirstInPairReadNameEx t>] [--secondRNExt <secondInPairReadNameExt>] [--rnPlus] [--noReverseComp] [--region <chr>[:<pos>[:<base>]]] [--gzip] [--noeof] [--params]
= Parameters =