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BamUtil: dedup

109 bytes removed, 00:45, 6 March 2016
Skip Records with any of the Specified Flags (--excludeFlags)
* supplementary reads
The Deduper will not work if secondary or supplementary Secondary (0x100) and Supplementary (0x800) reads are not currently must be excluded. It will not properly find the mates since there will be more than 2 reads with the same mate information.
=== Turn on Verbose Mode (<code>--verbose</code>) ===

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