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Vt

190 bytes added, 18:55, 19 March 2016
Normalization
-d debug [false]
-q do not print options and summary [false]
-m exits when REF is inconsistent with unmasked reference sequence for non SNPs. This overides the -n option [false] -n do warns but does not fail exit when REF is inconsistent with reference sequence for non SNPs [false]
-w window size for local sorting of variants [10000]
-I file containing list of intervals []
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