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Vt

16 bytes added, 19:10, 19 March 2016
Normalization
-d debug [false]
-q do not print options and summary [false]
-m exits warns but does not exit when REF is inconsistent with unmasked with masked reference sequence for non SNPs.
This overides the -n option [false]
-n warns but does not exit when REF is inconsistent
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